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Download RStudio Desktop. Purchase Contact Sales. Getting Started with RStudio Server. RStudio Workbench Admin Guide. As a first step with R, start the R help browser by typing help. For help on anyfunction, e. The install function in the BiocManager package has arguments that changeits default behavior; type?

For a more detailed explanation on using BiocManager and its advanced usage,such as version switching, please refer to theBiocManager vignette. Bioconductor packages, especially those in the development branch, areupdated fairly regularly. To identify packages requiring update withinyour version of Bioconductor , start a new session of R and enter.

Read the help page for? Some versions of R support more than one version of Bioconductor. Touse the latest version of Bioconductor for your version of R, enter. Remember that more recent versions of Bioconductor may be available if yourversion of R is out-of-date. For more details on Bioconductor approaches to versioning, seethe advanced sectionin the vignette and version numbering in the developer reference section. Rarely, underlying changes in the operating system require ALLinstalled packages to be recompiled for source C or Fortran compatibility.

One way to address this might be to start a new Rsession and enter. As this will reinstall all currently installed packages, it likelyinvolves a significant amount of network bandwidth and compilationtime. All packages are implicitly updated, and the cumulative effectmight introduce wrinkles that disrupt your work flow. Remember to keep default installation options. Once you open RStudio, installing packages is the same as with Windows. Leave all default settings in the installation options.

Open RStudio. R will download all necessary files from the server you select here. Wait while all the parts of the R Commander package are installed. If you get permission errors while installing packages, close R Studio and reopen it with administrator privileges.

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